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  1. sysbiobig.dei.unipd.it › software › funpatFunPat – Systems Biology and Bioinformatics Group

    FunPat allows a user-friendly organization of the outcome and an advanced visualization through HTML pages for an immediate interpretation of the results. The vignette shows into details the application of FunPat functions to a toy example with simulated RNA-seq data. Since FunPat is not constrained by any specific statistical distributions ...

  2. www.researchgate.net › profile › Tiziana-SanaviaFunPat: function-based pattern analysis on RNA-seq time series...

    Here we present FunPat, an R package for time series RNA sequencing data that integrates gene selection, clustering and functional annotation into a single framework. FunPat exploits functional ...

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  4. bmcgenomics.biomedcentral.com › articles › 10FunPat: function-based pattern analysis on RNA-seq time series...

    1. Juni 2015 · Background Dynamic expression data, nowadays obtained using high-throughput RNA sequencing, are essential to monitor transient gene expression changes and to study the dynamics of their transcriptional activity in the cell or response to stimuli. Several methods for data selection, clustering and functional analysis are available; however, these steps are usually performed independently ...

  5. pubmed.ncbi.nlm.nih.gov › 26046293FunPat: function-based pattern analysis on RNA-seq time series...

    Methods: Here we present FunPat, an R package for time series RNA sequencing data that integrates gene selection, clustering and functional annotation into a single framework. FunPat exploits functional annotations by performing for each functional term, e.g. a Gene Ontology term, an integrated selection-clustering analysis to select ...

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