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DAVID is a database and a set of tools for analyzing gene lists and finding biological themes, pathways, and interactions. It is used by researchers from over 100 countries and has over 69K citations.
- Functional Annotation Functional Annotation Clustering Functional Annotation Chart Functional Annotation Table
Functional Annotation Functional Annotation Clustering...
- Gene Functional Classification
Gene Functional Classification - DAVID Functional Annotation...
- Gene ID Conversion
Gene ID Conversion - DAVID Functional Annotation...
- Gene Name Batch Viewer
Gene Name Batch Viewer - DAVID Functional Annotation...
- Documentation
Documentation - DAVID Functional Annotation Bioinformatics...
- Tutorial
annotation for a given gene (Gene Report) and methods for...
- FAQ
FAQ - DAVID Functional Annotation Bioinformatics Microarray...
- Licensing Information
Licensing Information - DAVID Functional Annotation...
- Functional Annotation Functional Annotation Clustering Functional Annotation Chart Functional Annotation Table
20. Jan. 2021 · In addition, to take full advantage of the well-known KEGG and BioCarta pathways, the DAVID Pathway Viewer, another feature of the DAVID Functional Annotation Tool, can display genes from a user's list on pathway maps to facilitate biological interpretation in a network context.
- Verify that your list has been uploaded and begin analysis
- Gene Name Batch Viewer
- DAVID Gene Report
- Functional Annotation Summary
- Functional Annotation Table
- Functional Annotation Chart
- Functional Annotation Clustering
- Gene Functional Classification
- Gene ID Conversion
- Additional Help
In the List tab, you will see species listed for your list and a list name.
This tool provides a view containing gene names and taxonomies for a list of identifiers as well as links to more specific annotation for a given gene (Gene Report) and methods for viewing related genes (Related Genes) from the list or background population. This tool provides a quick and informative look at the list before proceeding with more in-...
The DAVID Gene Report contains annotations that are more specific to a given gene. The DAVID Gene Report header will contain the user’s original uploaded gene list identifier, the DAVID Gene Name, including the gene symbol, a link to find Related Genes in the user’s list or background gene set, based on shared functional annotation, and the taxonom...
The Functional Annotation Summary provides annotation type specific annotation for the user’s list including gene counts and percentages and organizes the annotation types into categories. From the summary, a user can use the Functional Annotation Table, Functional Annotation Chart or Functional Annotation Clustering tools with one or multiple ann...
The Functional Annotation Table provides annotations associated with a user’s list of genes for user-selected categories in tabular format. This tool quickly links the user's list to the breadth of annotation contained in the DAVID Knowledgebase with no statistical inference and is well suited for looking at genes on an individual basis, providing...
This tool provides enrichment analysis using a modified Fisher Exact Test to identify the most overrepresented annotation terms associated with a user's gene list as compared to a background gene set. Flexible options are provided to change gene count and p-value thresholds and display different aspects of the analysis. Clicking blue bars will prov...
This tool groups similar annotation terms together using the Kappa statistic to determine pairwise similarity scores and a novel fuzzy clustering algorithm. The fuzzy feature of the clustering algorithm allows a term to participate in multiple groups. The tool helps the user focus on biological themes associated with their gene list by reducing r...
This tool allows a user to group genes which are functionally similar together, thereby providing a biological network view of their list. As with the Functional Annotation Clustering tool, this tool uses a Kappa statistic to measure similarity between pairs of genes based on shared association of terms and groups those genes into functionally rela...
This tool can efficiently convert gene/protein identifiers from one identifier type to another at the gene level. The tool can automatically suggest possible identifier types for ambiguous gene/protein identifiers and converted identifiers can be downloaded or submitted back to DAVID as a gene list or background population set.
DAVID Documentation Nature Protocols Paper DAVID Forum Contact the DAVID Team
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What is DAVID? The Database for Annotation, Visualization and Integrated Discovery (DAVID) bioinformatics resources consists of an integrated biological knowledgebase and analytic tools aimed at systematically extracting biological meaning from large gene/protein lists thereby providing
23. März 2022 · DAVID is a popular bioinformatics resource system including a web server and web service for functional annotation and enrichment analyses of gene lists. It consists of a comprehensive knowledgebase and a set of functional analysis tools. Here, we report all updates made in 2021.
DAVID Web site provides query interface. If users only need a small set of data, i.e. some annotations for 10 genes, all above information can be queried through the DAVID Functional Annotation Table that is part of DAVID Functional Annotation Tool; Example 1: Cross Mapping Gene IDs: Task: I have 35439_at,679_at , .... 1000 Affy IDs. I would ...
14. Aug. 2003 · DAVID, a web-accessible program that integrates functional genomic annotations with intuitive graphical summaries, has been described and will assist in the interpretation of genome-scale datasets by facilitating the transition from data collection to biological meaning.
