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1. Juni 2015 · As the analysis of RNA-seq time-series can results in the selection of a high number of differentially expressed genes (DEGs), likely to include false-positives, we analyzed RNA-seq data using ...
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Methods: Here we present FunPat, an R package for time series RNA sequencing data that integrates gene selection, clustering and functional annotation into a single framework. FunPat exploits functional annotations by performing for each functional term, e.g. a Gene Ontology term, an integrated selection-clustering analysis to select ...