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  1. www.researchgate.net › profile › Tiziana-SanaviaFunPat: function-based pattern analysis on RNA-seq time series...

    analysis in each Gene Set. In particular, when a hierarchical structure of the functional annotations is available, as in GO database, FunPat searches for temporal patterns

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  3. pubmed.ncbi.nlm.nih.gov › 26046293FunPat: function-based pattern analysis on RNA-seq time series...

    Methods: Here we present FunPat, an R package for time series RNA sequencing data that integrates gene selection, clustering and functional annotation into a single framework. FunPat exploits functional annotations by performing for each functional term, e.g. a Gene Ontology term, an integrated selection-clustering analysis to select ...

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